MLOC_54546 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.259230.776628.491229.882
LEAShoots from the seedlings (10 cm shoot stage)26.966720.612817.84521.7556
INF1Young developing inflorescences (5mm)83.22384.169982.270276.4013
INF2Developing inflorescences (1-1.5 cm)89.610296.230186.1093112.519
ROORoots from the seedlings (10 cm shoot stage)9.5168217.116614.121524.4744
NODDeveloping tillers at six leaf stage, 3rd internode12.331917.871818.88976.6172
CAR5Developing grain, bracts removed (5 DPA)55.385152.570957.844961.3156
CAR15Developing grain, bracts removed (15 DPA)22.039420.794821.332752.8795



CDS Structure of MLOC_54546






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54546.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369644NoneNoneNoneNone
MLOC_54546.1CUST_3263_PI427708080AvailableAvailablecontig_39203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50790.1 -2 0.0 1280 727/1078 (67%) 13102.m05764 protein nuclear-pore anchor, putative, expressed
TAIR PP10 AT1G79280.1 -2 0.0 621 466/1364 (34%) | Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093