- Predicted Gene MLOC_54546
MLOC_54546 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54546_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54546_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 14.2592 | 30.7766 | 28.4912 | 29.882 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 26.9667 | 20.6128 | 17.845 | 21.7556 |
INF1 | Young developing inflorescences (5mm) | 83.223 | 84.1699 | 82.2702 | 76.4013 |
INF2 | Developing inflorescences (1-1.5 cm) | 89.6102 | 96.2301 | 86.1093 | 112.519 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.51682 | 17.1166 | 14.1215 | 24.4744 |
NOD | Developing tillers at six leaf stage, 3rd internode | 12.3319 | 17.8718 | 18.889 | 76.6172 |
CAR5 | Developing grain, bracts removed (5 DPA) | 55.3851 | 52.5709 | 57.8449 | 61.3156 |
CAR15 | Developing grain, bracts removed (15 DPA) | 22.0394 | 20.7948 | 21.3327 | 52.8795 |
CDS Structure of MLOC_54546
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54546.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g50790.1 |
-2 |
0.0 |
1280 |
727/1078 (67%) |
13102.m05764 protein nuclear-pore anchor, putative, expressed |
TAIR PP10 |
AT1G79280.1 |
-2 |
0.0 |
621 |
466/1364 (34%) |
| Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093 |