MLOC_54528 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.675163.46554.603559.2441
LEAShoots from the seedlings (10 cm shoot stage)681.86312111386.34916.401
INF1Young developing inflorescences (5mm)51.736752.752764.569551.1526
INF2Developing inflorescences (1-1.5 cm)27.320436.26641.427840.9049
ROORoots from the seedlings (10 cm shoot stage)3.603718.5862816.684710.667
NODDeveloping tillers at six leaf stage, 3rd internode532.615501.557558.1621460.7
CAR5Developing grain, bracts removed (5 DPA)293.114348.077275.23326.677
CAR15Developing grain, bracts removed (15 DPA)40.18249.721240.8784113.688



CDS Structure of MLOC_54528






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54528.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250645.1NoneNoneNoneNone
MLOC_54528.1CUST_3261_PI427708080AvailableAvailablecontig_39193 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g04840.1 +2 5e-125 364 202/259 (78%) 13107.m00428 protein PsbP, putative, expressed
TAIR PP10 AT1G06680.1 +2 1e-102 307 175/266 (66%) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263