- Predicted Gene MLOC_54528
MLOC_54528 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 47.6751 | 63.465 | 54.6035 | 59.2441 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 681.863 | 1211 | 1386.34 | 916.401 |
| INF1 | Young developing inflorescences (5mm) | 51.7367 | 52.7527 | 64.5695 | 51.1526 |
| INF2 | Developing inflorescences (1-1.5 cm) | 27.3204 | 36.266 | 41.4278 | 40.9049 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 3.60371 | 8.58628 | 16.6847 | 10.667 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 532.615 | 501.557 | 558.162 | 1460.7 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 293.114 | 348.077 | 275.23 | 326.677 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 40.182 | 49.7212 | 40.8784 | 113.688 |
CDS Structure of MLOC_54528
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54528.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g04840.1 |
+2 |
5e-125 |
364 |
202/259 (78%) |
13107.m00428 protein PsbP, putative, expressed |
| TAIR PP10 |
AT1G06680.1 |
+2 |
1e-102 |
307 |
175/266 (66%) |
| Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263 |