MLOC_54525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.515073.748844.173723.86926
LEAShoots from the seedlings (10 cm shoot stage)17.421110.559111.570411.0331
INF1Young developing inflorescences (5mm)3.744264.372354.10723.53746
INF2Developing inflorescences (1-1.5 cm)8.880628.160988.754099.42476
ROORoots from the seedlings (10 cm shoot stage)8.991784.218784.373115.69467
NODDeveloping tillers at six leaf stage, 3rd internode1.327061.503391.782694.68919
CAR5Developing grain, bracts removed (5 DPA)6.051325.932823.5785.1317
CAR15Developing grain, bracts removed (15 DPA)8.419.284288.0739320.7557



CDS Structure of MLOC_54525






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54525.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252281.1NoneNoneNoneNone
MLOC_54525.2CUST_3260_PI427708080AvailableAvailablecontig_39191 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39560.1 +2 1e-140 429 214/313 (68%) 13108.m04222 protein OTU-like cysteine protease family protein, putative, expressed
TAIR PP10 AT3G57810.1 +2 4e-78 259 125/190 (66%) Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=274