- Predicted Gene MLOC_54504
MLOC_54504 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 5.48819 | 3.41556 | 4.2846 | 3.95618 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 4.69461 | 9.42388 | 14.932 | 6.96853 |
| INF1 | Young developing inflorescences (5mm) | 3.54221 | 3.8043 | 3.83112 | 3.12858 |
| INF2 | Developing inflorescences (1-1.5 cm) | 3.44819 | 3.05629 | 3.28367 | 3.42472 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 10.1762 | 6.05209 | 7.04255 | 6.88394 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.01842 | 4.46778 | 2.99542 | 10.2366 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 5.90688 | 7.83096 | 6.65349 | 6.44448 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.04233 | 1.88505 | 1.76522 | 4.59288 |
CDS Structure of MLOC_54504
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54504.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g01510.2 |
-2 |
2e-80 |
250 |
118/166 (71%) |
13105.m00088 protein cytoplasmic membrane protein, putative, expressed |
| TAIR PP10 |
AT1G33490.1 |
-2 |
9e-67 |
214 |
96/161 (60%) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:12150941-12152276 REVERSE LENGTH=175 |
