- Predicted Gene MLOC_54501
MLOC_54501 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 3.36653 | 3.74696 | 3.46126 | 3.85606 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.23567 | 0.798236 | 0.8182 | 1.07229 |
| INF1 | Young developing inflorescences (5mm) | 3.15507 | 4.01683 | 4.74101 | 3.68709 |
| INF2 | Developing inflorescences (1-1.5 cm) | 4.44372 | 3.76118 | 4.47373 | 5.01512 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 3.96303 | 2.59995 | 3.9742 | 3.54097 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 4.22837 | 3.12209 | 3.37518 | 9.37223 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 2.00165 | 2.51417 | 2.44388 | 2.5504 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.602321 | 0.551784 | 0.690737 | 1.58461 |
CDS Structure of MLOC_54501
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54501.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g46520.1 |
+1 |
8e-172 |
512 |
274/398 (69%) |
13105.m04970 protein polygalacturonase, putative, expressed |
| TAIR PP10 |
AT1G80170.1 |
+1 |
3e-81 |
273 |
154/393 (39%) |
Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444 |