MLOC_54501 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.366533.746963.461263.85606
LEAShoots from the seedlings (10 cm shoot stage)2.235670.7982360.81821.07229
INF1Young developing inflorescences (5mm)3.155074.016834.741013.68709
INF2Developing inflorescences (1-1.5 cm)4.443723.761184.473735.01512
ROORoots from the seedlings (10 cm shoot stage)3.963032.599953.97423.54097
NODDeveloping tillers at six leaf stage, 3rd internode4.228373.122093.375189.37223
CAR5Developing grain, bracts removed (5 DPA)2.001652.514172.443882.5504
CAR15Developing grain, bracts removed (15 DPA)0.6023210.5517840.6907371.58461



CDS Structure of MLOC_54501






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54501.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368523NoneNoneNoneNone
MLOC_54501.1CUST_3254_PI427708080AvailableAvailablecontig_39177 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46520.1 +1 8e-172 512 274/398 (69%) 13105.m04970 protein polygalacturonase, putative, expressed
TAIR PP10 AT1G80170.1 +1 3e-81 273 154/393 (39%) Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444