- Predicted Gene MLOC_54500
MLOC_54500 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 3.96378 | 2.44882 | 2.89993 | 2.98462 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.1905 | 0.0451661 | 0 | 0.919803 |
| INF1 | Young developing inflorescences (5mm) | 64.6994 | 93.914 | 84.3478 | 78.6071 |
| INF2 | Developing inflorescences (1-1.5 cm) | 57.6288 | 64.7299 | 52.5044 | 72.324 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 6.83695 | 5.18463 | 8.33886 | 6.66156 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.047154 | 0.131964 | 0.052652 | 0.353879 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.299578 | 0.142696 | 0.141783 | 0.209475 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.3158 | 0.682778 | 2.84567 | 4.75019 |
CDS Structure of MLOC_54500
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54500.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g46520.1 |
+1 |
4e-157 |
463 |
237/385 (62%) |
13105.m04970 protein polygalacturonase, putative, expressed |
| TAIR PP10 |
AT1G80170.1 |
+1 |
5e-89 |
286 |
160/381 (42%) |
Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444 |