MLOC_54500 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.963782.448822.899932.98462
LEAShoots from the seedlings (10 cm shoot stage)2.19050.045166100.919803
INF1Young developing inflorescences (5mm)64.699493.91484.347878.6071
INF2Developing inflorescences (1-1.5 cm)57.628864.729952.504472.324
ROORoots from the seedlings (10 cm shoot stage)6.836955.184638.338866.66156
NODDeveloping tillers at six leaf stage, 3rd internode0.0471540.1319640.0526520.353879
CAR5Developing grain, bracts removed (5 DPA)0.2995780.1426960.1417830.209475
CAR15Developing grain, bracts removed (15 DPA)2.31580.6827782.845674.75019



CDS Structure of MLOC_54500






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54500.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54500.1CUST_13224_PI427708080AvailableAvailablecontig_39177 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46520.1 +1 4e-157 463 237/385 (62%) 13105.m04970 protein polygalacturonase, putative, expressed
TAIR PP10 AT1G80170.1 +1 5e-89 286 160/381 (42%) Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444