MLOC_54496 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.384115.137513.702816.435
LEAShoots from the seedlings (10 cm shoot stage)7.53261.327241.851063.05774
INF1Young developing inflorescences (5mm)16.425917.726319.777217.0737
INF2Developing inflorescences (1-1.5 cm)27.870930.1329.675636.7006
ROORoots from the seedlings (10 cm shoot stage)10.38711.54111.792115.379
NODDeveloping tillers at six leaf stage, 3rd internode7.997076.663436.0463821.6506
CAR5Developing grain, bracts removed (5 DPA)8.419.477498.4224810.1431
CAR15Developing grain, bracts removed (15 DPA)2.282352.422222.347436.4402



CDS Structure of MLOC_54496






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54496.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373086NoneNoneNoneNone
MLOC_54496.1CUST_3252_PI427708080AvailableAvailablecontig_39173 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g36020.1 -2 7e-166 485 303/412 (74%) 13108.m03781 protein Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed
TAIR PP10 AT3G14000.2 -2 5e-108 335 221/426 (52%) | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr3:4631170-4633353 REVERSE LENGTH=374