MLOC_54493 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.80448.038477.799239.51101
LEAShoots from the seedlings (10 cm shoot stage)5.676061.922242.337662.68328
INF1Young developing inflorescences (5mm)17.71115.662315.961315.7395
INF2Developing inflorescences (1-1.5 cm)12.857516.378917.1119.3712
ROORoots from the seedlings (10 cm shoot stage)8.077547.617789.328169.67558
NODDeveloping tillers at six leaf stage, 3rd internode2.405354.344297.1888714.7936
CAR5Developing grain, bracts removed (5 DPA)7.635548.649967.79099.12527
CAR15Developing grain, bracts removed (15 DPA)1.109191.148260.9644892.9894



CDS Structure of MLOC_54493






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54493.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365536NoneNoneNoneNone
MLOC_54493.1CUST_3251_PI427708080AvailableAvailablecontig_39172 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01690.1 -2 9e-135 395 256/271 (94%) 13106.m00080 protein septum site-determining protein minD, putative, expressed
TAIR PP10 AT5G24020.1 -2 1e-98 302 197/266 (74%) | Symbols: MIND, ARC11, ATMIND1 | septum site-determining protein (MIND) | chr5:8116731-8117711 FORWARD LENGTH=326