MLOC_54487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.901910.703810.043113.2456
LEAShoots from the seedlings (10 cm shoot stage)5.902493.998055.582164.4978
INF1Young developing inflorescences (5mm)15.808817.872821.879217.4865
INF2Developing inflorescences (1-1.5 cm)16.698418.501818.20421.9725
ROORoots from the seedlings (10 cm shoot stage)11.438211.821613.873815.1972
NODDeveloping tillers at six leaf stage, 3rd internode8.3490114.578216.025545.9997
CAR5Developing grain, bracts removed (5 DPA)7.841438.984217.176669.01228
CAR15Developing grain, bracts removed (15 DPA)1.643641.233051.326723.71781



CDS Structure of MLOC_54487






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251600.1NoneNoneNoneNone
MLOC_54487.1CUST_18107_PI427708080AvailableAvailablecontig_39167 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44630.2 -1 3e-119 358 194/229 (85%) 13107.m04698 protein thymidylate kinase, putative, expressed
TAIR PP10 AT5G59440.2 -1 4e-86 270 143/202 (71%) | Symbols: ZEU1, ATTMPK.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23971889-23972729 FORWARD LENGTH=224