MLOC_54486 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.863847.379786.792596.87388
LEAShoots from the seedlings (10 cm shoot stage)4.998353.903194.36253.81009
INF1Young developing inflorescences (5mm)18.186615.762514.669913.9475
INF2Developing inflorescences (1-1.5 cm)15.458414.619314.007616.5296
ROORoots from the seedlings (10 cm shoot stage)3.342437.14436.298457.97693
NODDeveloping tillers at six leaf stage, 3rd internode0.1452060.3262960.6618611.31738
CAR5Developing grain, bracts removed (5 DPA)9.18439.334439.584949.49281
CAR15Developing grain, bracts removed (15 DPA)2.340072.495671.887365.58848



CDS Structure of MLOC_54486






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54486.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54486.1CUST_13221_PI427708080AvailableAvailablecontig_39167 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44640.1 +3 0.0 896 439/566 (78%) 13107.m04700 protein ZOS7-13 - C2H2 zinc finger protein, expressed
TAIR PP10 AT3G12270.1 +3 0.0 575 303/571 (53%) | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601