- Predicted Gene MLOC_54486
MLOC_54486 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 5.86384 | 7.37978 | 6.79259 | 6.87388 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.99835 | 3.90319 | 4.3625 | 3.81009 |
INF1 | Young developing inflorescences (5mm) | 18.1866 | 15.7625 | 14.6699 | 13.9475 |
INF2 | Developing inflorescences (1-1.5 cm) | 15.4584 | 14.6193 | 14.0076 | 16.5296 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.34243 | 7.1443 | 6.29845 | 7.97693 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.145206 | 0.326296 | 0.661861 | 1.31738 |
CAR5 | Developing grain, bracts removed (5 DPA) | 9.1843 | 9.33443 | 9.58494 | 9.49281 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.34007 | 2.49567 | 1.88736 | 5.58848 |
CDS Structure of MLOC_54486
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54486.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g44640.1 |
+3 |
0.0 |
896 |
439/566 (78%) |
13107.m04700 protein ZOS7-13 - C2H2 zinc finger protein, expressed |
TAIR PP10 |
AT3G12270.1 |
+3 |
0.0 |
575 |
303/571 (53%) |
| Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601 |