MLOC_54480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.0132110.00238.525379.68222
LEAShoots from the seedlings (10 cm shoot stage)9.7070711.042811.29869.92174
INF1Young developing inflorescences (5mm)15.372617.743115.734814.6492
INF2Developing inflorescences (1-1.5 cm)23.698419.609619.50924.0373
ROORoots from the seedlings (10 cm shoot stage)6.888518.709237.0570911.1677
NODDeveloping tillers at six leaf stage, 3rd internode4.459438.298058.1353128.664
CAR5Developing grain, bracts removed (5 DPA)11.180611.061811.629811.5858
CAR15Developing grain, bracts removed (15 DPA)15.903214.752414.06935.8273



CDS Structure of MLOC_54480






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54480.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54480.1CUST_13219_PI427708080AvailableAvailablecontig_39162 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g11780.1 +3 0.0 1001 563/825 (68%) 13102.m01273 protein transcription factor S-II, central domain containing protein, expressed
TAIR PP10 AT5G11430.1 +3 2e-122 400 305/832 (37%) SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873