- Predicted Gene MLOC_54480
MLOC_54480 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.01321 | 10.0023 | 8.52537 | 9.68222 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.70707 | 11.0428 | 11.2986 | 9.92174 |
| INF1 | Young developing inflorescences (5mm) | 15.3726 | 17.7431 | 15.7348 | 14.6492 |
| INF2 | Developing inflorescences (1-1.5 cm) | 23.6984 | 19.6096 | 19.509 | 24.0373 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 6.88851 | 8.70923 | 7.05709 | 11.1677 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 4.45943 | 8.29805 | 8.13531 | 28.664 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 11.1806 | 11.0618 | 11.6298 | 11.5858 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 15.9032 | 14.7524 | 14.069 | 35.8273 |
CDS Structure of MLOC_54480
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54480.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g11780.1 |
+3 |
0.0 |
1001 |
563/825 (68%) |
13102.m01273 protein transcription factor S-II, central domain containing protein, expressed |
| TAIR PP10 |
AT5G11430.1 |
+3 |
2e-122 |
400 |
305/832 (37%) |
SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873 |