- Predicted Gene MLOC_54452
MLOC_54452 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 36.3601 | 35.2402 | 35.116 | 35.4459 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 50.8547 | 26.7652 | 25.7312 | 29.8751 |
| INF1 | Young developing inflorescences (5mm) | 33.4673 | 26.6717 | 27.7486 | 24.4492 |
| INF2 | Developing inflorescences (1-1.5 cm) | 23.7952 | 23.088 | 23.1152 | 25.1574 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 17.1391 | 12.4055 | 17.1638 | 16.4567 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 6.9788 | 7.53972 | 9.31631 | 25.1608 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 25.6467 | 26.9356 | 24.6331 | 24.7854 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 8.58529 | 8.11059 | 7.45883 | 18.4748 |
CDS Structure of MLOC_54452
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54452.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os09g26760.1 |
-1 |
0.0 |
1043 |
586/938 (62%) |
13109.m02586 protein DNA repair metallo-beta-lactamase family protein |
| TAIR PP10 |
AT2G45700.1 |
-1 |
0.0 |
630 |
331/613 (54%) |
sterile alpha motif (SAM) domain-containing protein | chr2:18827216-18830505 REVERSE LENGTH=723 |
