- Predicted Gene MLOC_54449
MLOC_54449 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54449_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54449_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 1.78847 | 2.0226 | 1.8042 | 2.32391 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.47613 | 1.58011 | 1.99868 | 1.64752 |
INF1 | Young developing inflorescences (5mm) | 2.86029 | 3.32977 | 3.6943 | 3.33726 |
INF2 | Developing inflorescences (1-1.5 cm) | 5.25942 | 5.85617 | 5.76213 | 7.31509 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.18877 | 2.24219 | 2.32241 | 3.3099 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.11722 | 4.68568 | 4.85456 | 16.8909 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.80939 | 2.27369 | 1.45259 | 2.24162 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.664854 | 0.535994 | 0.44911 | 1.557 |
CDS Structure of MLOC_54449
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54449.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g63250.1 |
+1 |
3e-83 |
267 |
148/325 (46%) |
13101.m06787 protein josephin, putative, expressed |
TAIR PP10 |
AT3G54130.1 |
+1 |
3e-77 |
248 |
136/283 (48%) |
Josephin family protein | chr3:20042895-20044429 REVERSE LENGTH=280 |