MLOC_54420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2943570.1168570.1851540.182938
LEAShoots from the seedlings (10 cm shoot stage)0.289850.2963310.2018140.226973
INF1Young developing inflorescences (5mm)0.0180346000.0163722
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)6.516273.385882.221234.32032
NODDeveloping tillers at six leaf stage, 3rd internode00.01150690.006464110.0507892
CAR5Developing grain, bracts removed (5 DPA)0.4351440.6124360.3477320.51002
CAR15Developing grain, bracts removed (15 DPA)0.017273100.02483320.047472



CDS Structure of MLOC_54420






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54420.1CUST_13208_PI427708080AvailableAvailablecontig_39129 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g25980.1 +2 0.0 712 361/475 (76%) 13104.m02454 protein cytokinin-O-glucosyltransferase 2, putative, expressed
TAIR PP10 AT1G22380.1 +2 8e-178 518 266/481 (55%) | Symbols: AtUGT85A3, UGT85A3 | UDP-glucosyl transferase 85A3 | chr1:7900522-7902332 REVERSE LENGTH=488