MLOC_54419 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains369.637319.618332.481312.506
LEAShoots from the seedlings (10 cm shoot stage)144.205123.802142.214100.981
INF1Young developing inflorescences (5mm)55.339754.665745.454444.4423
INF2Developing inflorescences (1-1.5 cm)55.648862.243374.677267.3327
ROORoots from the seedlings (10 cm shoot stage)416.769254.972308.48272.301
NODDeveloping tillers at six leaf stage, 3rd internode259.038230.263215.172501.02
CAR5Developing grain, bracts removed (5 DPA)157.49160.422120.364137.437
CAR15Developing grain, bracts removed (15 DPA)57.077641.391647.0416118.699



CDS Structure of MLOC_54419






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54419.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370379NoneNoneNoneNone
MLOC_54419.3CUST_3245_PI427708080AvailableAvailablecontig_39125 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g26690.1 -3 0.0 531 264/291 (91%) 13107.m02646 protein aquaporin protein, putative, expressed
TAIR PP10 AT3G54820.1 -3 7e-165 472 232/279 (83%) | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsic protein 2;5 | chr3:20302117-20303738 FORWARD LENGTH=286