MLOC_54414 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.901614.649412.553718.7967
LEAShoots from the seedlings (10 cm shoot stage)14.726610.902316.843312.8839
INF1Young developing inflorescences (5mm)53.409364.654665.44262.3187
INF2Developing inflorescences (1-1.5 cm)90.001967.97272.253597.7681
ROORoots from the seedlings (10 cm shoot stage)27.66721.585222.162132.3166
NODDeveloping tillers at six leaf stage, 3rd internode1.443673.4613815.576118.4336
CAR5Developing grain, bracts removed (5 DPA)25.53125.065523.678229.4712
CAR15Developing grain, bracts removed (15 DPA)9.008849.020067.5186225.2484



CDS Structure of MLOC_54414






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54414.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54414.2CUST_7617_PI427708083AvailableAvailablecontig_39118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08360.1 +2 2e-156 450 222/238 (93%) 13105.m00919 protein rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed
TAIR PP10 AT5G52470.1 +2 1e-144 419 206/236 (87%) | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin 1 | chr5:21294290-21296509 FORWARD LENGTH=308