MLOC_5441 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 14.7447 | 12.4248 | 12.2376 | 15.1648 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 11.6607 | 15.5692 | 15.966 | 13.1575 |
| INF1 | Young developing inflorescences (5mm) | 15.2497 | 17.7571 | 16.7301 | 16.7227 |
| INF2 | Developing inflorescences (1-1.5 cm) | 14.093 | 14.2381 | 16.3178 | 18.2271 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 22.6505 | 21.2968 | 24.963 | 29.359 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 19.9692 | 26.4574 | 21.6885 | 77.9787 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 14.5319 | 18.9636 | 15.4273 | 18.7166 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.81387 | 3.35511 | 3.06454 | 8.64828 |
CDS Structure of MLOC_5441
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5441.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g09820.1 |
-2 |
4e-114 |
333 |
168/195 (86%) |
13106.m01057 protein cupin superfamily protein, putative, expressed |
| TAIR PP10 |
AT1G19130.1 |
-2 |
4e-63 |
202 |
104/189 (55%) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | chr1:6609545-6610555 REVERSE LENGTH=192 |
