- Predicted Gene MLOC_54402
MLOC_54402 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.47337 | 10.0626 | 10.8015 | 9.80416 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 16.6236 | 16.3062 | 17.9509 | 15.208 |
| INF1 | Young developing inflorescences (5mm) | 16.2622 | 16.7994 | 14.2013 | 13.2648 |
| INF2 | Developing inflorescences (1-1.5 cm) | 12.0955 | 12.2602 | 13.8828 | 13.4273 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 9.05625 | 11.5233 | 10.8386 | 14.259 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 13.7106 | 13.9073 | 15.1879 | 49.8601 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 10.5257 | 9.89365 | 11.0753 | 9.91309 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.7993 | 5.80303 | 4.3172 | 12.1698 |
CDS Structure of MLOC_54402
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54402.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g15630.1 |
+1 |
9e-176 |
508 |
285/432 (66%) |
13101.m01730 protein zinc finger, C3HC4 type domain containing protein, expressed |
| TAIR PP10 |
AT1G75400.1 |
+1 |
8e-59 |
205 |
171/454 (38%) |
RING/U-box superfamily protein | chr1:28297609-28299464 FORWARD LENGTH=455 |