MLOC_54402 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.4733710.062610.80159.80416
LEAShoots from the seedlings (10 cm shoot stage)16.623616.306217.950915.208
INF1Young developing inflorescences (5mm)16.262216.799414.201313.2648
INF2Developing inflorescences (1-1.5 cm)12.095512.260213.882813.4273
ROORoots from the seedlings (10 cm shoot stage)9.0562511.523310.838614.259
NODDeveloping tillers at six leaf stage, 3rd internode13.710613.907315.187949.8601
CAR5Developing grain, bracts removed (5 DPA)10.52579.8936511.07539.91309
CAR15Developing grain, bracts removed (15 DPA)5.79935.803034.317212.1698



CDS Structure of MLOC_54402






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54402.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362776NoneNoneNoneNone
MLOC_54402.1CUST_3242_PI427708080AvailableAvailablecontig_39110 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15630.1 +1 9e-176 508 285/432 (66%) 13101.m01730 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT1G75400.1 +1 8e-59 205 171/454 (38%) RING/U-box superfamily protein | chr1:28297609-28299464 FORWARD LENGTH=455