MLOC_54401 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.652649.677826.6814110.5465
LEAShoots from the seedlings (10 cm shoot stage)10.52138.498767.276918.92295
INF1Young developing inflorescences (5mm)24.316924.989922.896726.0338
INF2Developing inflorescences (1-1.5 cm)47.043342.219335.080659.5741
ROORoots from the seedlings (10 cm shoot stage)1.75146.892684.5838711.364
NODDeveloping tillers at six leaf stage, 3rd internode2.369595.100944.6884620.4997
CAR5Developing grain, bracts removed (5 DPA)17.179414.118915.384220.3658
CAR15Developing grain, bracts removed (15 DPA)8.938377.866056.9554124.4763



CDS Structure of MLOC_54401






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54401.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54401.2CUST_12765_PI427708083AvailableAvailablecontig_391078 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01940.1 +1 2e-61 212 115/197 (58%) 13102.m00123 protein transcription factor jumonji, putative
TAIR PP10 AT3G07610.2 +1 2e-22 98 75/235 (32%) | Symbols: IBM1 | Transcription factor jumonji (jmjC) domain-containing protein | chr3:2426148-2429358 FORWARD LENGTH=762