- Predicted Gene MLOC_54401
MLOC_54401 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54401_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54401_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.65264 | 9.67782 | 6.68141 | 10.5465 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.5213 | 8.49876 | 7.27691 | 8.92295 |
INF1 | Young developing inflorescences (5mm) | 24.3169 | 24.9899 | 22.8967 | 26.0338 |
INF2 | Developing inflorescences (1-1.5 cm) | 47.0433 | 42.2193 | 35.0806 | 59.5741 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.7514 | 6.89268 | 4.58387 | 11.364 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.36959 | 5.10094 | 4.68846 | 20.4997 |
CAR5 | Developing grain, bracts removed (5 DPA) | 17.1794 | 14.1189 | 15.3842 | 20.3658 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.93837 | 7.86605 | 6.95541 | 24.4763 |
CDS Structure of MLOC_54401
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54401.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g01940.1 |
+1 |
2e-61 |
212 |
115/197 (58%) |
13102.m00123 protein transcription factor jumonji, putative |
TAIR PP10 |
AT3G07610.2 |
+1 |
2e-22 |
98 |
75/235 (32%) |
| Symbols: IBM1 | Transcription factor jumonji (jmjC) domain-containing protein | chr3:2426148-2429358 FORWARD LENGTH=762 |