MLOC_54383 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.279113.937553.686763.06297
LEAShoots from the seedlings (10 cm shoot stage)0.1656700.03585450.0985879
INF1Young developing inflorescences (5mm)0.4403950.5300150.4245930.352788
INF2Developing inflorescences (1-1.5 cm)0.3359620.2443190.1512560.265513
ROORoots from the seedlings (10 cm shoot stage)0.4957310.4480210.5571360.51275
NODDeveloping tillers at six leaf stage, 3rd internode0.021430300.01397410.0152856
CAR5Developing grain, bracts removed (5 DPA)0.2279430.2303810.3558080.22626
CAR15Developing grain, bracts removed (15 DPA)0.04790180.04992800.138709



CDS Structure of MLOC_54383






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54383.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54383.2CUST_13203_PI427708080AvailableAvailablecontig_39097 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g20384.1 +2 0.0 926 462/557 (83%) 13111.m02062 protein SacI homology domain containing protein, expressed
TAIR PP10 AT3G51460.1 +2 0.0 687 335/544 (62%) | Symbols: RHD4 | Phosphoinositide phosphatase family protein | chr3:19093007-19097142 FORWARD LENGTH=597