MLOC_54382 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains405.171419.995416.77447.433
LEAShoots from the seedlings (10 cm shoot stage)476.771219.08194.146265.71
INF1Young developing inflorescences (5mm)416.41370.244386.89352.691
INF2Developing inflorescences (1-1.5 cm)459.075392.059460.413493.841
ROORoots from the seedlings (10 cm shoot stage)464.466424.041416.774560.484
NODDeveloping tillers at six leaf stage, 3rd internode491.729540.592440.4571823.68
CAR5Developing grain, bracts removed (5 DPA)442.839405.283394.724428.122
CAR15Developing grain, bracts removed (15 DPA)81.113774.738675.0014186.411



CDS Structure of MLOC_54382






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54382.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356840NoneNoneNoneNone
MLOC_54382.1CUST_3237_PI427708080AvailableAvailablecontig_39097 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01600.2 +3 0.0 756 375/377 (99%) 13105.m00101 protein actin, putative, expressed
TAIR PP10 AT5G09810.1 +3 0.0 743 367/377 (97%) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377