MLOC_54361 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.630178.508828.4158.84565
LEAShoots from the seedlings (10 cm shoot stage)6.678912.555444.070643.96043
INF1Young developing inflorescences (5mm)24.502423.409619.894319.0518
INF2Developing inflorescences (1-1.5 cm)18.839119.405318.729820.6702
ROORoots from the seedlings (10 cm shoot stage)7.514468.684747.9806510.5871
NODDeveloping tillers at six leaf stage, 3rd internode0.119430.1363850.2443870.523835
CAR5Developing grain, bracts removed (5 DPA)12.135315.282314.944814.0286
CAR15Developing grain, bracts removed (15 DPA)1.59231.688461.754843.62523



CDS Structure of MLOC_54361






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54361.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252485.1NoneNoneNoneNone
MLOC_54361.1CUST_3232_PI427708080AvailableAvailablecontig_39073 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18410.1 +3 0.0 590 294/358 (82%) 13103.m02206 protein DNA-directed RNA polymerase subunit, putative, expressed
TAIR PP10 AT1G60620.1 +3 2e-155 452 231/356 (65%) | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385