- Predicted Gene MLOC_54361
MLOC_54361 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54361_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54361_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 9.63017 | 8.50882 | 8.415 | 8.84565 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.67891 | 2.55544 | 4.07064 | 3.96043 |
INF1 | Young developing inflorescences (5mm) | 24.5024 | 23.4096 | 19.8943 | 19.0518 |
INF2 | Developing inflorescences (1-1.5 cm) | 18.8391 | 19.4053 | 18.7298 | 20.6702 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.51446 | 8.68474 | 7.98065 | 10.5871 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.11943 | 0.136385 | 0.244387 | 0.523835 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.1353 | 15.2823 | 14.9448 | 14.0286 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.5923 | 1.68846 | 1.75484 | 3.62523 |
CDS Structure of MLOC_54361
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54361.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g18410.1 |
+3 |
0.0 |
590 |
294/358 (82%) |
13103.m02206 protein DNA-directed RNA polymerase subunit, putative, expressed |
TAIR PP10 |
AT1G60620.1 |
+3 |
2e-155 |
452 |
231/356 (65%) |
| Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385 |