MLOC_54352 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.1829.6346810.961411.3065
LEAShoots from the seedlings (10 cm shoot stage)0.3949510.1810060.2205580.23213
INF1Young developing inflorescences (5mm)0.1189140.1407590.2225520.169101
INF2Developing inflorescences (1-1.5 cm)0.8173661.196751.025511.36261
ROORoots from the seedlings (10 cm shoot stage)0.5328620.5821190.6573240.74905
NODDeveloping tillers at six leaf stage, 3rd internode0.6412430.4745742.755523.05687
CAR5Developing grain, bracts removed (5 DPA)15.338216.861315.978118.9985
CAR15Developing grain, bracts removed (15 DPA)14.47313.390414.872840.5035



CDS Structure of MLOC_54352






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54352.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357700NoneNoneNoneNone
MLOC_54352.1CUST_3230_PI427708080AvailableAvailablecontig_39067 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g02019.1 +3 0.0 704 355/450 (79%) 13106.m00116 protein cytochrome P450, putative, expressed
TAIR PP10 AT2G32440.2 +3 0.0 543 265/445 (60%) | Symbols: KAO2 | ent-kaurenoic acid hydroxylase 2 | chr2:13775668-13777783 FORWARD LENGTH=489