MLOC_54335 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0604486000.0660658
LEAShoots from the seedlings (10 cm shoot stage)00.03092260.03027160.0579979
INF1Young developing inflorescences (5mm)00.01615650.01836280.0356976
INF2Developing inflorescences (1-1.5 cm)0.0150480.042542200.0483597
ROORoots from the seedlings (10 cm shoot stage)000.0992810.0631967
NODDeveloping tillers at six leaf stage, 3rd internode00.02781150.07261270.177894
CAR5Developing grain, bracts removed (5 DPA)6.300726.448535.674566.64379
CAR15Developing grain, bracts removed (15 DPA)13.336416.915520.352243.6341



CDS Structure of MLOC_54335






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54335.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361794NoneNoneNoneNone
AK375888NoneNoneNoneNone
MLOC_54335.1CUST_3228_PI427708080AvailableAvailablecontig_39060 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48570.1 +2 4e-153 464 271/551 (49%) 13102.m05495 protein peptide transporter PTR2, putative, expressed
TAIR PP10 AT1G32450.1 +2 5e-152 461 287/559 (51%) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614