MLOC_54323 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains64.581344.159538.918253.0103
LEAShoots from the seedlings (10 cm shoot stage)23.041318.182625.863419.667
INF1Young developing inflorescences (5mm)50.411147.61442.945.6202
INF2Developing inflorescences (1-1.5 cm)35.917636.329239.19645.6713
ROORoots from the seedlings (10 cm shoot stage)43.803235.170444.22748.6924
NODDeveloping tillers at six leaf stage, 3rd internode2.843172.81556.8556111.2943
CAR5Developing grain, bracts removed (5 DPA)59.7470.437761.338172.7784
CAR15Developing grain, bracts removed (15 DPA)13.468312.8229.7944832.724



CDS Structure of MLOC_54323






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54323.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373068NoneNoneNoneNone
MLOC_54323.1CUST_3223_PI427708080AvailableAvailablecontig_39051 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g04290.1 +2 1e-72 223 111/121 (92%) 13106.m00382 protein S10/S20 domain containing ribosomal protein, putative, expressed
TAIR PP10 AT5G62300.2 +2 2e-66 205 102/117 (87%) Ribosomal protein S10p/S20e family protein | chr5:25021388-25022235 REVERSE LENGTH=124