MLOC_54319 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.059732.007081.746362.18588
LEAShoots from the seedlings (10 cm shoot stage)0.9362410.6756121.038780.882133
INF1Young developing inflorescences (5mm)3.946494.75615.494154.4437
INF2Developing inflorescences (1-1.5 cm)6.435935.941265.980757.27273
ROORoots from the seedlings (10 cm shoot stage)1.147031.373962.042982.00933
NODDeveloping tillers at six leaf stage, 3rd internode0.5447321.138230.9893014.18244
CAR5Developing grain, bracts removed (5 DPA)4.377164.444774.725664.83817
CAR15Developing grain, bracts removed (15 DPA)6.694097.987079.058219.5352



CDS Structure of MLOC_54319






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54319.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54319.2CUST_7605_PI427708083AvailableAvailablecontig_39050 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g28130.1 -3 4e-16 82 63/217 (29%) 13104.m02661 protein two-component response regulator, putative, expressed
TAIR PP10 AT4G31920.1 -3 3e-14 76 65/242 (27%) | Symbols: ARR10, RR10 | response regulator 10 | chr4:15444290-15446766 REVERSE LENGTH=552