MLOC_54304 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains84.331280.925390.581182.702
LEAShoots from the seedlings (10 cm shoot stage)89.6559114.194108.38185.8249
INF1Young developing inflorescences (5mm)33.010636.932640.700330.1079
INF2Developing inflorescences (1-1.5 cm)41.938145.733454.81649.6405
ROORoots from the seedlings (10 cm shoot stage)113.088137.667129.362154.175
NODDeveloping tillers at six leaf stage, 3rd internode147.83699.10299.7251320.109
CAR5Developing grain, bracts removed (5 DPA)57.98559.397353.443155.1053
CAR15Developing grain, bracts removed (15 DPA)11.030710.350911.585524.8056



CDS Structure of MLOC_54304






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54304.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362324NoneNoneNoneNone
MLOC_54304.1CUST_3218_PI427708080AvailableAvailablecontig_39037 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g44050.1 +1 2e-144 411 198/206 (96%) 13105.m04647 protein ras-related protein, putative, expressed
TAIR PP10 AT3G18820.1 +1 7e-131 376 184/205 (90%) | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | RAB GTPase homolog G3F | chr3:6484266-6486005 FORWARD LENGTH=206