MLOC_54284 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.769912.646913.418513.6376
LEAShoots from the seedlings (10 cm shoot stage)12.942612.775612.991411.2125
INF1Young developing inflorescences (5mm)20.164417.893418.643416.729
INF2Developing inflorescences (1-1.5 cm)29.686626.897629.466132.7556
ROORoots from the seedlings (10 cm shoot stage)17.08915.118513.331919.257
NODDeveloping tillers at six leaf stage, 3rd internode10.755618.845520.160962.1443
CAR5Developing grain, bracts removed (5 DPA)14.043114.012712.364114.1161
CAR15Developing grain, bracts removed (15 DPA)9.15778.592677.3122421.1288



CDS Structure of MLOC_54284






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54284.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54284.4CUST_13195_PI427708080AvailableAvailablecontig_39028 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g36930.1 -3 0.0 654 325/362 (90%) 13103.m04028 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT3G19760.1 -3 0.0 613 299/363 (82%) | Symbols: EIF4A-III | eukaryotic initiation factor 4A-III | chr3:6863790-6866242 FORWARD LENGTH=408