MLOC_54282 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.098626800.216801
LEAShoots from the seedlings (10 cm shoot stage)0.0514235000.0464606
INF1Young developing inflorescences (5mm)0.025059400.0319570.0491666
INF2Developing inflorescences (1-1.5 cm)0.056405000.0707379
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.0426507000.00249584
CAR5Developing grain, bracts removed (5 DPA)9.926419.315358.599049.75918
CAR15Developing grain, bracts removed (15 DPA)113.717102.478113.032283.938



CDS Structure of MLOC_54282






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54282.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375642NoneNoneNoneNone
MLOC_54282.2CUST_3217_PI427708080AvailableAvailablecontig_39027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41160.1 +2 5e-81 258 165/338 (49%) 13110.m03829 protein expressed protein
TAIR PP10 AT5G13620.1 +2 2e-13 71 32/89 (36%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4385385-4386373 REVERSE LENGTH=301