MLOC_54280 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.9047.040627.756727.74368
LEAShoots from the seedlings (10 cm shoot stage)7.329132.737233.987924.08005
INF1Young developing inflorescences (5mm)11.176412.274311.4749.81251
INF2Developing inflorescences (1-1.5 cm)8.8522110.41498.8063110.2886
ROORoots from the seedlings (10 cm shoot stage)5.747176.21416.262737.29396
NODDeveloping tillers at six leaf stage, 3rd internode2.508742.724534.520910.1294
CAR5Developing grain, bracts removed (5 DPA)10.82238.6861210.73749.51361
CAR15Developing grain, bracts removed (15 DPA)1.727741.051161.681813.44339



CDS Structure of MLOC_54280






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54280.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372306NoneNoneNoneNone
MLOC_54280.3CUST_3216_PI427708080AvailableAvailablecontig_39027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41150.1 +1 0.0 761 396/439 (90%) 13110.m03828 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT5G04620.2 +1 0.0 535 267/454 (59%) | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-1329934 FORWARD LENGTH=476