MLOC_54272 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.899613.8814.561915.7884
LEAShoots from the seedlings (10 cm shoot stage)4.914978.6050512.3587.69206
INF1Young developing inflorescences (5mm)4.874067.028175.180475.61237
INF2Developing inflorescences (1-1.5 cm)3.35833.558873.830564.3814
ROORoots from the seedlings (10 cm shoot stage)25.15579.5525623.575915.8603
NODDeveloping tillers at six leaf stage, 3rd internode0.8293671.148951.087153.29268
CAR5Developing grain, bracts removed (5 DPA)1.080510.1102980.02815490.38963
CAR15Developing grain, bracts removed (15 DPA)0.0639720.1474010.06239870.282561



CDS Structure of MLOC_54272






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54272.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372139NoneNoneNoneNone
MLOC_54272.1CUST_3214_PI427708080AvailableAvailablecontig_39022 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53180.2 +1 0.0 540 270/328 (82%) 13102.m06065 protein 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
TAIR PP10 AT1G05010.1 +1 4e-141 412 206/319 (65%) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323