MLOC_54267 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.920724.889927.318227.3187
LEAShoots from the seedlings (10 cm shoot stage)75.227811.129731.007631.4185
INF1Young developing inflorescences (5mm)11.26157.545588.156278.35761
INF2Developing inflorescences (1-1.5 cm)1.537341.507462.394852.16379
ROORoots from the seedlings (10 cm shoot stage)7.1760210.19919.6038511.6629
NODDeveloping tillers at six leaf stage, 3rd internode13.79914.14513.6765229.572
CAR5Developing grain, bracts removed (5 DPA)22.237624.792824.264426.7242
CAR15Developing grain, bracts removed (15 DPA)1.060530.7713791.830593.12534



CDS Structure of MLOC_54267






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54267.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365601NoneNoneNoneNone
MLOC_54267.1CUST_3213_PI427708080AvailableAvailablecontig_39012 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g21034.1 -3 0.0 689 353/427 (83%) 13101.m02235 protein pectinesterase, putative, expressed
TAIR PP10 AT3G14310.1 -3 3e-169 504 283/543 (52%) | Symbols: ATPME3, PME3 | pectin methylesterase 3 | chr3:4772214-4775095 REVERSE LENGTH=592