MLOC_54261 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.835843.000622.777683.27097
LEAShoots from the seedlings (10 cm shoot stage)2.342130.652690.6740110.97514
INF1Young developing inflorescences (5mm)7.44149.22549.352637.00606
INF2Developing inflorescences (1-1.5 cm)8.515078.4249.492259.12814
ROORoots from the seedlings (10 cm shoot stage)2.273581.730322.9661.96542
NODDeveloping tillers at six leaf stage, 3rd internode0.7484451.320451.042673.3909
CAR5Developing grain, bracts removed (5 DPA)5.607645.534056.182555.27396
CAR15Developing grain, bracts removed (15 DPA)1.072950.636721.218082.17863



CDS Structure of MLOC_54261






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54261.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54261.1CUST_7600_PI427708083AvailableAvailablecontig_39006 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g31340.1 +2 1e-97 313 199/457 (44%) 13112.m03190 protein OsFBD15 - F-box and FBD domain containing protein, expressed
TAIR PP10 AT5G02700.1 +2 6e-15 78 79/317 (25%) F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456