- Predicted Gene MLOC_54261
MLOC_54261 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 4.83584 | 3.00062 | 2.77768 | 3.27097 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.34213 | 0.65269 | 0.674011 | 0.97514 |
INF1 | Young developing inflorescences (5mm) | 7.4414 | 9.2254 | 9.35263 | 7.00606 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.51507 | 8.424 | 9.49225 | 9.12814 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.27358 | 1.73032 | 2.966 | 1.96542 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.748445 | 1.32045 | 1.04267 | 3.3909 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.60764 | 5.53405 | 6.18255 | 5.27396 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.07295 | 0.63672 | 1.21808 | 2.17863 |
CDS Structure of MLOC_54261
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54261.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g31340.1 |
+2 |
1e-97 |
313 |
199/457 (44%) |
13112.m03190 protein OsFBD15 - F-box and FBD domain containing protein, expressed |
TAIR PP10 |
AT5G02700.1 |
+2 |
6e-15 |
78 |
79/317 (25%) |
F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456 |