MLOC_54228 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04878840.042169900.0621012
LEAShoots from the seedlings (10 cm shoot stage)0.0786526000.0823171
INF1Young developing inflorescences (5mm)000.05484660.0367867
INF2Developing inflorescences (1-1.5 cm)0.038092000.0461573
ROORoots from the seedlings (10 cm shoot stage)000.1508020.0491768
NODDeveloping tillers at six leaf stage, 3rd internode0.079920500.02757530.0315679
CAR5Developing grain, bracts removed (5 DPA)45.515553.816253.621849.2338
CAR15Developing grain, bracts removed (15 DPA)195.833167.964172.578413.667



CDS Structure of MLOC_54228






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54228.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54228.1CUST_7596_PI427708083AvailableAvailablecontig_38980 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g32660.1 +2 3e-137 416 189/215 (88%) 13102.m03538 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
TAIR PP10 AT5G03650.1 +2 3e-111 347 162/217 (75%) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805