MLOC_54214 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4422460.2902550.1659670.335672
LEAShoots from the seedlings (10 cm shoot stage)0.0972951000.0939103
INF1Young developing inflorescences (5mm)0.02547680.05622790.06574980.0575854
INF2Developing inflorescences (1-1.5 cm)0.09550620.02260180.03075580.0595881
ROORoots from the seedlings (10 cm shoot stage)0.2405570.03238590.3557480.139541
NODDeveloping tillers at six leaf stage, 3rd internode0.06948710.01322440.008661630.0449601
CAR5Developing grain, bracts removed (5 DPA)372.673256.734265.701319.037
CAR15Developing grain, bracts removed (15 DPA)0.3673010.7172070.0385871.1114



CDS Structure of MLOC_54214






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54214.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374104NoneNoneNoneNone
MLOC_54214.1CUST_280_PI427708083AvailableAvailablecontig_38970 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g08200.1 +2 2e-92 291 179/397 (45%) 13111.m00863 protein eukaryotic aspartyl protease domain containing protein, expressed
TAIR PP10 AT1G44130.1 +2 1e-77 252 145/383 (38%) Eukaryotic aspartyl protease family protein | chr1:16787508-16789318 REVERSE LENGTH=405