MLOC_54205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.993222.175661.995532.24846
LEAShoots from the seedlings (10 cm shoot stage)6.748081.421283.003152.9848
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.025447600.01491450.0326356
ROORoots from the seedlings (10 cm shoot stage)2.564821.830972.897812.40947
NODDeveloping tillers at six leaf stage, 3rd internode40.598947.479.61981101.663
CAR5Developing grain, bracts removed (5 DPA)3.95484.826655.36215.33415
CAR15Developing grain, bracts removed (15 DPA)5.153066.24314.8272615.3152



CDS Structure of MLOC_54205






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54205.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250615.1NoneNoneNoneNone
MLOC_54205.1CUST_3203_PI427708080AvailableAvailablecontig_38962 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g18730.1 -3 0.0 1224 603/750 (80%) 13111.m01888 protein glycosyl hydrolase family 3 protein, putative, expressed
TAIR PP10 AT1G78060.1 -3 0.0 815 409/748 (55%) Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767