MLOC_54143 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.879034.336044.996024.61113
LEAShoots from the seedlings (10 cm shoot stage)6.148363.119844.188323.82625
INF1Young developing inflorescences (5mm)18.782318.763818.714415.5785
INF2Developing inflorescences (1-1.5 cm)20.371221.935322.066423.3861
ROORoots from the seedlings (10 cm shoot stage)3.797024.397534.631185.07384
NODDeveloping tillers at six leaf stage, 3rd internode2.221341.254562.568174.38433
CAR5Developing grain, bracts removed (5 DPA)3.695853.950472.681283.42652
CAR15Developing grain, bracts removed (15 DPA)5.762666.162375.0471713.3968



CDS Structure of MLOC_54143






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54143.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54143.1CUST_13173_PI427708080AvailableAvailablecontig_38920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50220.1 +3 3e-133 397 202/227 (89%) 13103.m05460 protein homologous-pairing protein meu13, putative, expressed
TAIR PP10 AT1G13330.1 +3 8e-104 320 153/222 (69%) | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4568008-4569410 FORWARD LENGTH=226