MLOC_54142 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.302922.40671.748991.95004
LEAShoots from the seedlings (10 cm shoot stage)2.210013.097262.914092.29305
INF1Young developing inflorescences (5mm)2.668722.274162.608722.06154
INF2Developing inflorescences (1-1.5 cm)4.923934.882575.06485.28532
ROORoots from the seedlings (10 cm shoot stage)0.946512.545841.934132.74162
NODDeveloping tillers at six leaf stage, 3rd internode2.210063.104724.0536810.3908
CAR5Developing grain, bracts removed (5 DPA)2.578552.413912.569072.42533
CAR15Developing grain, bracts removed (15 DPA)2.351591.832651.674184.59754



CDS Structure of MLOC_54142






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54142.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54142.1CUST_13172_PI427708080AvailableAvailablecontig_38920 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g44330.2 +1 0.0 659 330/508 (65%) 13112.m04687 protein serine/threonine-protein kinase PRP4, putative, expressed
TAIR PP10 AT3G25840.2 +1 0.0 574 290/494 (59%) Protein kinase superfamily protein | chr3:9452993-9456322 REVERSE LENGTH=673