MLOC_54121 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.718413.113112.846911.3573
LEAShoots from the seedlings (10 cm shoot stage)8.2040310.849416.24148.57249
INF1Young developing inflorescences (5mm)5.857916.232515.720893.96711
INF2Developing inflorescences (1-1.5 cm)2.727492.78623.961942.6535
ROORoots from the seedlings (10 cm shoot stage)19.336421.489322.786121.6645
NODDeveloping tillers at six leaf stage, 3rd internode13.604911.17787.5228731.1551
CAR5Developing grain, bracts removed (5 DPA)3.354923.405453.47372.61155
CAR15Developing grain, bracts removed (15 DPA)0.8878930.6575910.7765021.39944



CDS Structure of MLOC_54121






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54121.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54121.1NoneAvailableAvailablecontig_38904 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07750.1 +2 3e-145 441 228/285 (80%) 13102.m00886 protein cell cycle control protein, putative, expressed
TAIR PP10 AT1G54320.1 +2 2e-115 362 190/286 (66%) LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr1:20275732-20277793 REVERSE LENGTH=349