MLOC_54120 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.581063.530313.114523.21367
LEAShoots from the seedlings (10 cm shoot stage)2.940041.833062.688671.98315
INF1Young developing inflorescences (5mm)4.596744.817444.472193.85441
INF2Developing inflorescences (1-1.5 cm)4.110534.513024.548644.7036
ROORoots from the seedlings (10 cm shoot stage)4.044945.631044.840976.34378
NODDeveloping tillers at six leaf stage, 3rd internode2.942113.643433.52299.62142
CAR5Developing grain, bracts removed (5 DPA)3.233153.453693.644273.23689
CAR15Developing grain, bracts removed (15 DPA)0.7613280.7573490.8669991.82724



CDS Structure of MLOC_54120






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54120.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366984NoneNoneNoneNone
MLOC_54120.2CUST_3193_PI427708080AvailableAvailablecontig_38903 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g19300.1 -1 0.0 703 375/450 (83%) 13103.m02310 protein peptide chain release factor protein, putative, expressed
TAIR PP10 AT1G56350.1 -1 0.0 550 286/386 (74%) Peptide chain release factor 2 | chr1:21094840-21097826 FORWARD LENGTH=482