MLOC_54117 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.427429.333130.337828.6993
LEAShoots from the seedlings (10 cm shoot stage)24.381524.060927.610621.5944
INF1Young developing inflorescences (5mm)61.617357.409956.26747.7404
INF2Developing inflorescences (1-1.5 cm)52.501152.895448.686956.3266
ROORoots from the seedlings (10 cm shoot stage)22.309229.430127.510133.7347
NODDeveloping tillers at six leaf stage, 3rd internode8.0872210.803117.460539.8496
CAR5Developing grain, bracts removed (5 DPA)26.741427.470528.320726.5657
CAR15Developing grain, bracts removed (15 DPA)14.144213.933610.974629.9235



CDS Structure of MLOC_54117






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54117.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54117.1CUST_13166_PI427708080AvailableAvailablecontig_38901 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g02730.1 -2 0.0 1031 503/652 (77%) 13104.m00192 protein tRNA-dihydrouridine synthase 3-like, putative, expressed
TAIR PP10 AT4G38890.1 -2 0.0 777 392/659 (59%) FMN-linked oxidoreductases superfamily protein | chr4:18135909-18139100 REVERSE LENGTH=691