MLOC_54110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.8099712.912713.228311.4912
LEAShoots from the seedlings (10 cm shoot stage)15.078722.711314.452713.4839
INF1Young developing inflorescences (5mm)2.799633.147043.679642.56637
INF2Developing inflorescences (1-1.5 cm)3.058461.912044.449022.9513
ROORoots from the seedlings (10 cm shoot stage)22.743718.510230.664821.9632
NODDeveloping tillers at six leaf stage, 3rd internode15.876517.865920.674151.4175
CAR5Developing grain, bracts removed (5 DPA)19.751217.330517.221616.3076
CAR15Developing grain, bracts removed (15 DPA)10.61899.3128111.270623.0658



CDS Structure of MLOC_54110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54110.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354018NoneNoneNoneNone
MLOC_54110.1CUST_3191_PI427708080AvailableAvailablecontig_38898 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g70550.1 -2 0.0 832 400/490 (82%) 13101.m07668 protein heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed
TAIR PP10 AT5G27730.1 -2 0.0 635 283/437 (65%) Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472