MLOC_54108 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.479756.957345.6475.91108
LEAShoots from the seedlings (10 cm shoot stage)3.958192.099843.273412.70405
INF1Young developing inflorescences (5mm)9.163029.439679.140677.70583
INF2Developing inflorescences (1-1.5 cm)8.773318.301228.609059.21689
ROORoots from the seedlings (10 cm shoot stage)3.250365.150334.407165.65145
NODDeveloping tillers at six leaf stage, 3rd internode1.674612.302122.867987.89083
CAR5Developing grain, bracts removed (5 DPA)6.743457.063626.367066.41209
CAR15Developing grain, bracts removed (15 DPA)2.871292.957122.546186.45795



CDS Structure of MLOC_54108






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54108.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370143NoneNoneNoneNone
MLOC_54108.2CUST_3190_PI427708080AvailableAvailablecontig_38897 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g19940.1 +1 0.0 1040 496/594 (84%) 13109.m01880 protein cwfJ-like family protein, putative, expressed
TAIR PP10 AT5G56900.2 +1 0.0 701 346/599 (58%) CwfJ-like family protein / zinc finger (CCCH-type) family protein | chr5:23019750-23022670 REVERSE LENGTH=596