MLOC_54083 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)10.045229.282926.468318.5628
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.237520.2932790.7798681.25181
CAR5Developing grain, bracts removed (5 DPA)0.09385040.4345280.3017690.306188
CAR15Developing grain, bracts removed (15 DPA)0.4354960.471690.383361.07683



CDS Structure of MLOC_54083






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54083.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251254.1NoneNoneNoneNone
MLOC_54083.4CUST_18102_PI427708080AvailableAvailablecontig_38752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g32930.1 +2 6e-70 221 131/229 (57%) 13108.m03423 protein expressed protein
TAIR PP10 AT4G04330.1 +2 8e-47 159 87/171 (51%) Chaperonin-like RbcX protein | chr4:2116700-2118563 REVERSE LENGTH=174