MLOC_54049 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07163950.1411780.1528510.104925
LEAShoots from the seedlings (10 cm shoot stage)1.08971.501231.399821.03709
INF1Young developing inflorescences (5mm)0.752370.8535450.8431380.680546
INF2Developing inflorescences (1-1.5 cm)1.995641.478721.530091.7725
ROORoots from the seedlings (10 cm shoot stage)0.356840.2953390.5602980.385084
NODDeveloping tillers at six leaf stage, 3rd internode0.06283570.06098350.09937420.203647
CAR5Developing grain, bracts removed (5 DPA)0.4213460.3126620.4365020.354736
CAR15Developing grain, bracts removed (15 DPA)0.1235230.1410030.1889760.287957



CDS Structure of MLOC_54049






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54049.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54049.1CUST_13155_PI427708080AvailableAvailablecontig_38839 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49460.1 -2 6e-148 464 237/327 (72%) 13104.m05049 protein protein kinase domain containing protein, expressed
TAIR PP10 AT5G06740.1 -2 2e-140 456 285/676 (42%) Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652