MLOC_54048 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5775150.6777240.8074870.641273
LEAShoots from the seedlings (10 cm shoot stage)0.211030.1743830.07913790.10543
INF1Young developing inflorescences (5mm)1.626092.211892.401371.43182
INF2Developing inflorescences (1-1.5 cm)3.487623.094552.800242.96991
ROORoots from the seedlings (10 cm shoot stage)0.5225410.8329690.6354640.760509
NODDeveloping tillers at six leaf stage, 3rd internode0.3949020.4272810.8483171.4542
CAR5Developing grain, bracts removed (5 DPA)0.8403631.151840.8032690.7918
CAR15Developing grain, bracts removed (15 DPA)0.1927570.002087730.2583080.286565



CDS Structure of MLOC_54048






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54048.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54048.3NoneAvailableAvailablecontig_38839 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g14270.1 +2 4e-127 217 117/235 (50%) 13111.m01462 protein transposon protein, putative, unclassified
TAIR PP10 AT1G19260.1 +1 2e-73 156 83/171 (49%) TTF-type zinc finger protein with HAT dimerisation domain | chr1:6657260-6659569 REVERSE LENGTH=769