MLOC_54047 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.099919.150169.294517.48608
LEAShoots from the seedlings (10 cm shoot stage)12.323313.11611.61219.53185
INF1Young developing inflorescences (5mm)4.183224.230164.75883.29461
INF2Developing inflorescences (1-1.5 cm)5.253075.008745.842275.11728
ROORoots from the seedlings (10 cm shoot stage)11.545813.341811.538813.5904
NODDeveloping tillers at six leaf stage, 3rd internode10.28328.533836.77424.523
CAR5Developing grain, bracts removed (5 DPA)9.87779.266088.359937.80696
CAR15Developing grain, bracts removed (15 DPA)2.080552.460681.959464.55451



CDS Structure of MLOC_54047






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54047.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249196.1NoneNoneNoneNone
MLOC_54047.1CUST_3186_PI427708080AvailableAvailablecontig_38839 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g14100.1 +1 0.0 781 425/501 (85%) 13101.m01554 protein BT1 family protein, putative, expressed
TAIR PP10 AT5G54860.1 +1 0.0 565 295/492 (60%) Major facilitator superfamily protein | chr5:22284721-22287025 FORWARD LENGTH=491