MLOC_54046 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.351214.274415.9314.9124
LEAShoots from the seedlings (10 cm shoot stage)6.6309814.4719.985310.9242
INF1Young developing inflorescences (5mm)0.0238550.1863420.7014090.240389
INF2Developing inflorescences (1-1.5 cm)0.04672930.1344080.3281150.155203
ROORoots from the seedlings (10 cm shoot stage)18.35226.058610.616725.578
NODDeveloping tillers at six leaf stage, 3rd internode0.02142580.03023550.04206270.0934999
CAR5Developing grain, bracts removed (5 DPA)0.880990.6436460.8497530.738204
CAR15Developing grain, bracts removed (15 DPA)0.3680720.5143740.4648511.03961



CDS Structure of MLOC_54046






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54046.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251004.1NoneNoneNoneNone
MLOC_54046.2CUST_3185_PI427708080AvailableAvailablecontig_38837 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g03350.1 -3 0.0 742 377/448 (84%) 13108.m00291 protein amino acid transporter, putative, expressed
TAIR PP10 AT5G40780.1 -3 0.0 659 329/447 (74%) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446