- Predicted Gene MLOC_54046
MLOC_54046 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 16.3512 | 14.2744 | 15.93 | 14.9124 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.63098 | 14.47 | 19.9853 | 10.9242 |
INF1 | Young developing inflorescences (5mm) | 0.023855 | 0.186342 | 0.701409 | 0.240389 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.0467293 | 0.134408 | 0.328115 | 0.155203 |
ROO | Roots from the seedlings (10 cm shoot stage) | 18.352 | 26.0586 | 10.6167 | 25.578 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0214258 | 0.0302355 | 0.0420627 | 0.0934999 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.88099 | 0.643646 | 0.849753 | 0.738204 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.368072 | 0.514374 | 0.464851 | 1.03961 |
CDS Structure of MLOC_54046
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54046.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g03350.1 |
-3 |
0.0 |
742 |
377/448 (84%) |
13108.m00291 protein amino acid transporter, putative, expressed |
TAIR PP10 |
AT5G40780.1 |
-3 |
0.0 |
659 |
329/447 (74%) |
| Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446 |