MLOC_54038 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.308674.925165.729174.949
LEAShoots from the seedlings (10 cm shoot stage)3.453392.594472.778332.29998
INF1Young developing inflorescences (5mm)6.323596.478946.295675.05495
INF2Developing inflorescences (1-1.5 cm)4.180814.935675.068814.6792
ROORoots from the seedlings (10 cm shoot stage)4.945624.156195.816824.66269
NODDeveloping tillers at six leaf stage, 3rd internode5.187894.675394.8877512.3589
CAR5Developing grain, bracts removed (5 DPA)4.376464.908683.974333.95443
CAR15Developing grain, bracts removed (15 DPA)1.299920.8249491.099282.43525



CDS Structure of MLOC_54038






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54038.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357273NoneNoneNoneNone
MLOC_54038.3CUST_279_PI427708083AvailableAvailablecontig_38832 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g49710.1 -3 1e-51 174 97/155 (63%) 13103.m05402 protein ribosomal protein S13p/S18e, putative, expressed
TAIR PP10 AT5G14320.1 -3 3e-42 149 70/116 (60%) Ribosomal protein S13/S18 family | chr5:4617839-4618772 REVERSE LENGTH=169