MLOC_54031 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains528.408516.604602.694596.279
LEAShoots from the seedlings (10 cm shoot stage)12.926633.10784.3597614.6428
INF1Young developing inflorescences (5mm)30.528638.999137.383135.3477
INF2Developing inflorescences (1-1.5 cm)65.772849.092767.769273.1768
ROORoots from the seedlings (10 cm shoot stage)472.626389.911316.338477.337
NODDeveloping tillers at six leaf stage, 3rd internode1.551552.504631.379266.45411
CAR5Developing grain, bracts removed (5 DPA)351.662350.864374.291401.233
CAR15Developing grain, bracts removed (15 DPA)55.193828.058156.7721120.127



CDS Structure of MLOC_54031






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54031.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252639.1NoneNoneNoneNone
MLOC_54031.1CUST_3183_PI427708080AvailableAvailablecontig_38829 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52860.1 -3 0.0 1353 651/868 (75%) 13103.m05766 protein lipoxygenase, putative, expressed
TAIR PP10 AT1G55020.1 -3 0.0 964 483/867 (56%) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859